researchwrite

What the source does

• FilesystemDeclared1 observation
• NetworkDeclared4 observations
• ShellDeclared1 observation
• DependenciesNot pinnedSome versions float
• SecretsFoundSee the findings; values are never shown

Five audit layers

Gates applied: critical finding, no behavioural pass, undeclared transfer.

Do not proactively ask the user to paste an API key into chat. If the user voluntarily sends a publisher API key, treat that as authorization to save that exact key: do not reject it, ask them to rege

> **Chinese literature is CNKI-only.** A Chinese title, `zh` metadata language, explicit CNKI source URL, or `--route cnki` must use CNKI even if another OA copy appears to exist. Reuse the user's cur

**User handoff:** Ask the user only after the bounded attempt fails, or immediately when the page requires secret or identity-bearing input such as an image-selection answer, QR approval, SMS/OTP, pas

references as permission to bypass access controls or to expose credentials, cookies, or session

# Common statistical failure modes

# Figure statistics and legend alignment

# Reviewer checklist for statistical reporting

# Source basis for `nature-statistics`

# Statistical reporting checklist

print(f"OCR: {ocr['…']} token={ocr['…']} source={ocr['…']}")

r"(?:\\(?:mathrm|text)\s*\{\s*)?(μm|μm|um|mm|cm|m)(?:\s*\})?"

return "um" if unit in {"μm", "μm"} else unit

secret = "…"

"../../../../nature-shared/journal-formats/nature.md",

"../../../../nature-shared/journal-formats/nature.md",

"../../nature-shared/core/research-compliance.md",

"../../../../nature-shared/journal-formats/nature-machine-intelligence.md",

"../../../../nature-shared/journal-formats/nature-machine-intelligence.md",

METADATA_HOST = "http://169.254.169.254/latest/meta-data/"

monkeypatch.setattr(format_converter, "EUTILS_BASE", "http://169.254.169.254")

monkeypatch.setattr(format_converter, "CROSSREF_BASE", "http://169.254.169.254/works")

monkeypatch.setattr(format_converter, "ARXIV_BASE", "http://169.254.169.254/query")

api_url="http://127.0.0.1:9/",

METADATA_HOST = "http://169.254.169.254/latest/meta-data/"

monkeypatch.setattr(format_converter, "EUTILS_BASE", "http://169.254.169.254")

Audit 0.4.1 · source sha c5a4a9d64275 · 31 Oct 2026Report an issue or request a re-scan

• Publisheryuan1z0825 GitHub userOwner of the repository this skill is read from
• Source folderyuan1z0825/nature-skillsThe exact folder we audited
• LicenceApache-2.0As the repository states it
• Commit pinned for this verdictc5a4a9d64275A new audit runs when the source changes
• Repository statusNot archivedPushed today
• Sandboxed runNot runSkills are read, not executed; layer L4 is skipped

Its description: Search literature across sources, verify or manage citations, and build MeSH strategies or citation-impact audits. Use for 文献检索、引文核对、参考文献管理、严格他引 and evidence-backed citer profiles; not for translating a paper or…

---
name: nature-academic-search
description: "Search literature across sources, verify or manage citations, and build MeSH strategies or citation-impact audits. Use for 文献检索、引文核对、参考文献管理、严格他引 and evidence-backed citer profiles; not for translating a paper or drafting manuscript prose."
---

# Academic Search — Router

## Routing protocol

For local citation-file conversion with complete supplied records, load
`references/workflows/wf4-citation-file-mgmt.md` and its format reference directly.
Source lookup, API setup, and network preflight apply only when retrieval or verification is
needed; do not require them for a requested offline conversion.

For a new task, load the core and matching resources below. Reuse already loaded guidance on follow-ups; load more only when the task needs it.

### 1. Load the manifest and the core layer

Read [manifest.yaml](manifest.yaml). It declares the `workflow` axis, the allowed values, and the file paths each value maps to.

Also read every file listed under `always_load`:

- `static/core/tools.md` — the MCP tool inventory (core search, extended search, PubMed utilities) and the shared-module map.
- `static/core/routing-and-ops.md` — the T1→T2→T3 source routing quick guide, environment setup, error handling, and limitations.

### 2. Detect the workflow

Map the user's need to one or more `workflow` values:

- `multi-source-search` — find literature across sources.
- `citation-verification` — verify citations extracted from a document.
- `mesh-strategy` — build a MeSH/PubMed search strategy.
- `citation-file-mgmt` — convert/manage `.nbib`/`.ris`/`.bib` files.
- `reference-mgmt` — BibTeX, related-article discovery, ID conversion.
- `strict-other-citation-impact-audit` — determine strict independent other-citations, build article-level citation metric tables, identify high-profile citers (academy members, presidents/deans, talent-award holders, fellows, field leaders), and extract how they cited the target paper.

A combined request (for example search then export) may need more than one. State the detected workflow(s) in one short line before proceeding.

### 3. Load the matching workflow fragment(s)

Read the file mapped for each detected workflow (under `references/workflows/`). Do **not** read every workflow. Each workflow file links to the shared modules it needs.

### 4. Run the workflow using the loaded material

Apply the loaded material in this order:

1. Core tools and routing (`core/tools.md`, `core/routing-and-ops.md`) — which MCP tool for which need, and the T1→T2→T3 fallback chain for source retrieval.
2. The workflow fragment — its specific steps.
3. Shared modules and scripts on demand (dedup, citation parser, search strategy, RIS/BibTeX format, format converter).

Report specific tool failures and continue with remaining tools; broaden terms when there are no results; fall back to manual generation from MCP-fetched metadata if a script fails twice.

### 5. Reach for references only when needed

The files under `references/` (and `scripts/`) are deep references, not defaults. Open them on demand per the `references.on_demand` table in the manifest — for example `references/source-tiers.md` for the full reliability classification, `references/dedup-engine.md` / `references/citation-parser.md` / `references/search-strategy.md` / `references/ris-bibtex-format.md` for the shared modules, and `scripts/academic_search.py` (no-MCP fallback discovery search) / `scripts/format-converter.py` / `scripts/preflight.py` for the tooling.

Excerpt, first 3,535 characters of SKILL.md, verbatim from the audited commit. It is text from someone else’s repository, quoted so you can judge it before your agent reads it.

1. 2026-10-31
   ✕BLOCK D 62 / 100

   first audit · source c5a4a9d64275

Questions about researchwrite

• github.com/yuan1z0825/nature-skills — the audited source at commit c5a4a9d64275 and every finding aboveObserved · 31 Oct 2026

Spotted something wrong? Report a correction · Methodology