nature-response

What the source does

• FilesystemNone observedNo reads or writes in the source
• NetworkNone observedNo outbound calls in the source
• ShellNone observedNo commands run in the source
• DependenciesPinnedNothing floats
• SecretsNone foundNo keys in source

Five audit layers

Gates applied: no behavioural pass.

Audit 0.4.1 · source sha c5a4a9d64275 · 31 Oct 2026Report an issue or request a re-scan

• Publisheryuan1z0825 GitHub userOwner of the repository this skill is read from
• Source folderyuan1z0825/nature-skills/skills/nature-responseThe exact folder we audited
• LicenceApache-2.0As the repository states it
• Commit pinned for this verdictc5a4a9d64275A new audit runs when the source changes
• Repository statusNot archivedPushed today
• Sandboxed runNot runSkills are read, not executed; layer L4 is skipped

Its description: Draft, audit, or revise responses to peer review, revision cover letters, and marked-manuscript or LaTeX revision packages. Use for 审稿意见回复、逐点回复、返修信、 rebuttals and edits to existing response drafts. Initial-submission…

---
name: nature-response
description: >-
  Draft, audit, or revise responses to peer review, revision cover letters, and
  marked-manuscript or LaTeX revision packages. Use for 审稿意见回复、逐点回复、返修信、
  rebuttals and edits to existing response drafts. Initial-submission materials
  belong to nature-writing; simulated peer review belongs to nature-reviewer.
---

# Nature Reviewer Response — Router

## Routing protocol

For a new task, load the core and matching resources below. Reuse already loaded guidance on follow-ups; load more only when the task needs it.

### 1. Load the manifest and the core layer

Read [manifest.yaml](manifest.yaml). Then read every file listed under `always_load`:

- `static/core/stance.md` — the editor-facing purpose, the default stance, the red lines, and the source hierarchy that apply to every response job.
- `static/core/workflow.md` — accepted inputs, the revision correspondence workflow, and the output package format.

### 2. No content axis — identify mode and language inline

Unlike nature-writing or nature-figure, nature-response has no fragment axis. Its variation is identified at runtime, not by loading different content bodies:

- **task mode** — `draft` / `audit` / `revise` / `triage-only` / `cover-letter` / `revision-package` / `latex-template` / `appeal-like`.
- **decision type** — minor revision, major revision, revise-and-resubmit, transfer after review, or unclear.
- **user language** — if the user writes Chinese, also produce the 中文核对 block.

Decision type is required for a new package-level revision strategy or complete response package.
First extract it from the editor letter or task context. If it remains unclear, ask whether this
is a `Major Revision` or `Minor Revision` and pause only decision-dependent work. A local wording
edit, audit of an existing reply, or comment-level triage may proceed with decision type marked
unknown. Do not infer the decision from the number, tone, or difficulty of reviewer comments.

Use `references/intake-and-routing.md` to fix the task mode, minimum inputs, and readiness state before drafting. Route appeal-like cases separately; do not draft an appeal as the default path.

For a local edit or bounded audit, return the revised passage or findings and relevant missing
facts. Do not expand it into a master tracker, cover letter, or complete revision package unless
requested. Apply the package workflow below only to the parts needed for the requested output.

### 3. Run the workflow

Follow the workflow in `core/workflow.md`: if the user pasted a journal email, first parse manuscript metadata, decision type, editor instructions, reviewer reports, required files, deadlines, and reviewer-visibility rules from the email; identify mode and pass the decision-type gate; apply the Major- or Minor-Revision strategy without downgrading the severity of individual comments; extract editor instructions (IDs `E.1`) then reviewer comments (`R1.1`, `R2.1`) when present; classify each item by response action and independently verified work status; build an internal/editor master strategy and tracker; draft a standalone privacy-filtered response for each mutually blind reviewer; when a reviewer missed material already present in the manuscript, treat that as a clarity signal and revise the presentation instead of replying that the point was already stated; draft a revision cover letter when required; map every claimed change to a manuscript location or explicit placeholder; mark changed manuscript text in red on a backed-up copy when editing; format quoted revised manuscript text in the response letter in italics; flag missing author input; run QA; and derive package readiness from the per-item statuses and blocking state.

Whenever a response proposes or performs a manuscript main-text edit, also load
`../nature-shared/core/main-text-discipline.md`. Answer the reviewer completely
in the letter, but keep the manuscript change to the shortest text needed for
the reader. Prefer replacement or compression over appending, and route
non-central robustness or reconciliation detail to SI unless it changes the
central interpretation.

Never invent experiments, citations, line numbers, figure panels, supplementary items, editor instructions, or manuscript changes. Mark anything the author must supply as `AUTHOR_INPUT_NEEDED`.

### 4. Reach for references only when needed

The files under `references/` and `templates/` are deep resources, not defaults. Open them on demand per the `references.on_demand` table in the manifest — for example `references/comment-taxonomy.md` to classify comments, `references/action-mapping.md` for tracker fields, `references/tone-and-stance.md` for disagreement wording, `references/difficult-cases.md` for impossible experiments / conflicting reviewers / appeal-like cases, `references/chinese-author-alignment.md` for Chinese author notes, `references/latex-templates.md` for `.tex` cover/response/redline outputs, `../nature-shared/core/main-text-discipline.md` for reviewer-driven manuscript additions and evidence relocation, `references/package-consistency-audit.md` whenever the manuscript is edited alongside the letter or the package is about to be compiled and delivered, and `references/qa-checklist.md` before finalizing.

`qa-checklist.md` and `package-consistency-audit.md` are complementary and both apply to a final package: the first asks whether the response is complete, honest, and well-toned; the second asks whether the marked manuscript, the clean manuscript, and the letter actually agree with each other after editing. For a LaTeX package, run `scripts/check_package_consistency.py` after the first complete draft, after every manuscript edit, and immediately before delivery. Any manuscript edit invalidates the letter's verbatim quotes and page references, so re-run the audit rather than treating it as a one-time final check.

Excerpt, first 5,913 characters of SKILL.md, verbatim from the audited commit. It is text from someone else’s repository, quoted so you can judge it before your agent reads it.

git clone https://github.com/yuan1z0825/nature-skills
git -C nature-skills checkout c5a4a9d64275

Works in

1. 2026-10-31
   ✓SAFE B 89 / 100

   first audit · source c5a4a9d64275

Questions about nature-response

• github.com/yuan1z0825/nature-skills/tree/main/skills/nature-resp — the audited source at commit c5a4a9d64275 and every finding aboveObserved · 31 Oct 2026

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