Atlas / Skills / galaxy-dawn / Planning With Files

Planning With FilesSAFE

skills/galaxy-dawn/planning-with-files

Semi-automated research assistant for academic research and software development. Supports Claude Code, Codex CLI, Kimi Code CLI, and OpenCode across ideation, coding, experiments, writing, and publication.

Verdict
SAFE
Grade
B
Trust score
89 /100
Version
0.1.0
Hosts
1 documented
License
MIT
Stars
5,693
01

Overview

Semi-automated research assistant for academic research and software development. Supports Claude Code, Codex CLI, Kimi Code CLI, and OpenCode across ideation, coding, experiments, writing, and publication.

Read from source at commit 29ad4d4206fbOBSERVED · 2026-10-07
02

Host compatibility

What the documentation claims. We have not run a compatibility test.

HostStatusNotes
codexmentioned
03

What it tells the agent

The instruction file, verbatim from the audited commit — this is the text the model reads, and the surface the audit's instruction layer examines. Quoted here so you can judge it without cloning anything.

---
name: planning-with-files
description: Use this by default for non-trivial multi-step work that needs persistent planning, progress tracking, or durable notes on disk. Trigger when a task will likely span multiple tool calls, research steps, verification loops, or enough context that the plan should not live only in transient chat memory.
version: 0.1.0
---

# Planning with Files

Work like Manus: use persistent markdown files as your working memory on disk.

This is not just an optional planning style. It should be the default persistence layer for complex Codex work.

Use it proactively when:

- the task will likely take more than a few tool calls
- progress needs to be tracked across phases
- findings or evidence must be preserved while working
- the task may branch, pause, or resume later
- relying on chat context alone would be fragile

## Quick Start

Before ANY complex task:

1. **Create `task_plan.md`** in the working directory
2. **Define phases** with checkboxes
3. **Update after each phase** - mark [x] and change status
4. **Read before deciding** - refresh goals in attention window

## The 3-File Pattern

For every non-trivial task, create THREE files:

| File | Purpose | When to Update |
|------|---------|----------------|
| `task_plan.md` | Track phases and progress | After each phase |
| `notes.md` | Store findings and research | During research |
| `[deliverable].md` | Final output | At completion |

## Core Workflow

```
Loop 1: Create task_plan.md with goal and phases
Loop 2: Research → save to notes.md → update task_plan.md
Loop 3: Read notes.md → create deliverable → update task_plan.md
Loop 4: Deliver final output
```

### The Loop in Detail

**Before each major action:**
```bash
Read task_plan.md  # Refresh goals in attention window
```

**After each phase:**
```bash
Edit task_plan.md  # Mark [x], update status
```

**When storing information:**
```bash
Write notes.md     # Don't stuff context, store in file
```

## task_plan.md Template

Create this file FIRST for any complex task:

```markdown
# Task Plan: [Brief Description]

## Goal
[One sentence describing the end state]

## Phases
- [ ] Phase 1: Plan and setup
- [ ] Phase 2: Research/gather information
- [ ] Phase 3: Execute/build
- [ ] Phase 4: Review and deliver

## Key Questions
1. [Question to answer]
2. [Question to answer]

## Decisions Made
- [Decision]: [Rationale]

## Errors Encountered
- [Error]: [Resolution]

## Status
**Currently in Phase X** - [What I'm doing now]
```

## notes.md Template

For research and findings:

```markdown
# Notes: [Topic]

## Sources

### Source 1: [Name]
- URL: [link]
- Key points:
  - [Finding]
  - [Finding]

## Synthesized Findings

### [Category]
- [Finding]
- [Finding]
```

## Critical Rules

### 1. ALWAYS Create Plan First
Never start a complex task without `task_plan.md`. This is non-negotiable.

### 2. Read Before Decide
Before any major decision, read the plan file. This keeps goals in your attention window.

### 3. Update After Act
After completing any phase, immediately update the plan file:
- Mark completed phases with [x]
- Update the Status section
- Log any errors encountered

### 4. Store, Don't Stuff
Large outputs go to files, not context. Keep only paths in working memory.

### 5. Log All Errors
Every error goes in the "Errors Encountered" section. This builds knowledge for future tasks.

## When to Use This Pattern

**Use 3-file pattern for:**
- Multi-step tasks (3+ steps)
- Research tasks
- Building/creating something
- Tasks spanning multiple tool calls
- Anything requiring organization

**Skip for:**
- Simple questions
- Single-file edits
- Quick lookups

## Anti-Patterns to Avoid

| Don't | Do Instead |
|-------|------------|
| Use TodoWrite for persistence | Create `task_plan.md` file |
| State goals once and forget | Re-read plan before each decision |
| Hide errors and retry | Log errors to plan file |
| Stuff everything in context | Store large content in files |
| Start executing immediately | Create plan file FIRST |

## Advanced Patterns

See [reference.md](reference.md) for:
- Attention manipulation techniques
- Error recovery patterns
- Context optimization from Manus

See [examples.md](examples.md) for:
- Real task examples
- Complex workflow patterns
04

Trust audit

SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.

LayerWhat it checksResult
L0Provenance & inventoryPASS
L1Static analysis of the codeNA
L2Instruction surface (what it tells the agent)PASS
L3Class-specific surfacePASS
L4Behavioural (sandbox)SKIPPED

What the source does

Filesystem
none-observed
Network
none-observed
Shell
none-observed
Dependencies
pinned
Secrets in source
none-found

Findings (0)

No findings outside the package's declared scope.

Gates applied: no_behavioural_pass.

Audited 2026-10-07 · audit v0.4.1 · source sha 29ad4d4206fbfull audit observations/trust-audit/skill/galaxy-dawn__planning-with-files.json · Report an issue / request a re-scan
05

Audit history

Every audit this skill has had.

DateSourceVerdictGradeScoreChange
2026-10-0729ad4d4206fbSAFEB89first audit
06

Questions

What does the Planning With Files skill do?

Semi-automated research assistant for academic research and software development. Supports Claude Code, Codex CLI, Kimi Code CLI, and OpenCode across ideation, coding, experiments, writing, and publication.

Is Planning With Files safe to install?

The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean skill reads B.

What can Planning With Files access on my machine?

The audit observed no filesystem, network or shell use at all in its source.

Which assistants does Planning With Files work with?

Its documentation mentions codex. That is what the text claims, not a compatibility test we ran.

How current is this page?

The grade is for one exact copy of the source (29ad4d4206fb), read on 2026-10-07. The repository is watched, and a new audit runs when it changes — this is the first audit.

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