Atlas / Skills / brycewang-stanford / Gbif Api

Gbif ApiSAFE

skills/brycewang-stanford/gbif-api

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Verdict
SAFE
Grade
B
Trust score
89 /100
Version
—
Hosts
1 documented
License
NOASSERTION
Stars
4,535
01

Overview

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Read from source at commit e1ba289846fdOBSERVED · 2026-10-08
02

Host compatibility

What the documentation claims. We have not run a compatibility test.

HostStatusNotes
openclawmentioned
03

What it tells the agent

The instruction file, verbatim from the audited commit — this is the text the model reads, and the surface the audit's instruction layer examines. Quoted here so you can judge it without cloning anything.

---
name: gbif-api
description: "Global biodiversity data API for species occurrences and datasets"
metadata:
  openclaw:
    emoji: "🔍"
    category: "domains"
    subcategory: "ecology"
    keywords: ["ecology", "biodiversity", "taxonomy", "environmental science"]
    source: "https://www.gbif.org/developer/summary"
---

# GBIF API Guide

## Overview

The Global Biodiversity Information Facility (GBIF) is an international network and data infrastructure funded by governments worldwide, aimed at providing open access to biodiversity data. GBIF aggregates hundreds of millions of species occurrence records from natural history collections, citizen science platforms, monitoring networks, and published literature across the globe.

The GBIF API provides programmatic access to this vast repository of biodiversity data. Researchers can search for species occurrences by taxonomy, geography, time period, and dataset. The API also supports taxonomic name matching, dataset discovery, and species profile lookups. It serves as a foundational resource for ecological research, conservation planning, biogeography, and environmental impact assessments.

Ecologists, conservation biologists, biogeographers, and environmental scientists rely on the GBIF API to retrieve georeferenced occurrence data for species distribution modeling, climate change impact analysis, invasive species tracking, and biodiversity hotspot identification. The data is freely available under open data licenses.

## Authentication

No authentication required for read access. The GBIF API is publicly accessible without any API key or token. All search and retrieval endpoints are open. User authentication is only required for data publishing operations (creating datasets and uploading occurrences), which requires a GBIF account.

## Core Endpoints

### occurrence/search: Search Species Occurrences

Search for georeferenced biodiversity observation and specimen records across all GBIF-indexed datasets.

- **URL**: `GET https://api.gbif.org/v1/occurrence/search`
- **Parameters**:

| Parameter       | Type   | Required | Description                                          |
|-----------------|--------|----------|------------------------------------------------------|
| q               | string | No       | Full-text search query                               |
| taxonKey        | int    | No       | GBIF backbone taxonomy key                           |
| scientificName  | string | No       | Scientific name to filter by                         |
| country         | string | No       | ISO 3166-1 alpha-2 country code                      |
| hasCoordinate   | bool   | No       | Filter for georeferenced records only                |
| year            | string | No       | Year or range (e.g., `2020,2024`)                    |
| limit           | int    | No       | Number of results (default 20, max 300)              |
| offset          | int    | No       | Pagination offset                                    |

- **Example**:

```bash
curl "https://api.gbif.org/v1/occurrence/search?scientificName=Panthera+tigris&hasCoordinate=true&limit=10"
```

- **Response**: Returns `count` (total matches), `results` array with `key`, `scientificName`, `decimalLatitude`, `decimalLongitude`, `country`, `basisOfRecord`, `eventDate`, `datasetKey`, `publishingOrgKey`, and `media` links.

### species/match: Taxonomic Name Matching

Match a species name against the GBIF backbone taxonomy to resolve canonical names and get taxonomy keys.

- **URL**: `GET https://api.gbif.org/v1/species/match`
- **Parameters**:

| Parameter | Type   | Required | Description                              |
|-----------|--------|----------|------------------------------------------|
| name      | string | Yes      | Scientific name to match                 |
| kingdom   | string | No       | Kingdom filter for disambiguation        |
| strict    | bool   | No       | If true, only return exact matches       |

- **Example**:

```bash
curl "https://api.gbif.org/v1/species/match?name=Homo+sapiens"
```

- **Response**: Returns `usageKey`, `scientificName`, `canonicalName`, `rank`, `status`, `kingdom`, `phylum`, `class`, `order`, `family`, `genus`, `species`, `confidence` score, and `matchType`.

### dataset: Discover Datasets

Search for and retrieve metadata about GBIF-indexed datasets from publishers worldwide.

- **URL**: `GET https://api.gbif.org/v1/dataset`
- **Parameters**:

| Parameter       | Type   | Required | Description                                     |
|-----------------|--------|----------|-------------------------------------------------|
| q               | string | No       | Full-text search query                          |
| type            | string | No       | Dataset type: `OCCURRENCE`, `CHECKLIST`, etc.   |
| publishingOrg   | string | No       | Publishing organization UUID                    |
| limit           | int    | No       | Number of results (default 20, max 1000)        |
| offset          | int    | No       | Pagination offset                               |

- **Example**:

```bash
curl "https://api.gbif.org/v1/dataset?q=bird+monitoring&type=OCCURRENCE&limit=5"
```

- **Response**: Returns `count`, `results` array with `key`, `title`, `description`, `type`, `publishingOrganizationKey`, `license`, `recordCount`, and `endpoints`.

## Rate Limits

No formal rate limits are enforced on the GBIF API. However, GBIF recommends responsible use patterns. Large data downloads (millions of records) should use the asynchronous download API at `https://api.gbif.org/v1/occurrence/download/request` rather than paginating through the search endpoint. The search endpoint is limited to 100,000 records maximum per query via pagination.

## Common Patterns

### Species Distribution Mapping

Retrieve georeferenced occurrence data for species distribution modeling:

```python
import requests

params = {
    "taxonKey": 2480498,  # Panthera tigris
    "hasCoor
04

Trust audit

SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.

LayerWhat it checksResult
L0Provenance & inventoryPASS
L1Static analysis of the codeNA
L2Instruction surface (what it tells the agent)PASS
L3Class-specific surfacePASS
L4Behavioural (sandbox)SKIPPED

What the source does

Filesystem
none-observed
Network
none-observed
Shell
none-observed
Dependencies
pinned
Secrets in source
none-found

Findings (0)

No findings outside the package's declared scope.

Gates applied: no_behavioural_pass.

Audited 2026-10-08 · audit v0.4.1 · source sha e1ba289846fdfull audit observations/trust-audit/skill/brycewang-stanford__gbif-api.json · Report an issue / request a re-scan
05

Audit history

Every audit this skill has had.

DateSourceVerdictGradeScoreChange
2026-10-08e1ba289846fdSAFEB89first audit
06

Questions

What does the Gbif Api skill do?

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Is Gbif Api safe to install?

The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean skill reads B.

What can Gbif Api access on my machine?

The audit observed no filesystem, network or shell use at all in its source.

Which assistants does Gbif Api work with?

Its documentation mentions openclaw. That is what the text claims, not a compatibility test we ran.

How current is this page?

The grade is for one exact copy of the source (e1ba289846fd), read on 2026-10-08. The repository is watched, and a new audit runs when it changes — this is the first audit.

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