Atlas / Skills / brycewang-stanford / Deep Research

Deep ResearchSAFE

skills/brycewang-stanford/deep-research

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Verdict
SAFE
Grade
B
Trust score
89 /100
Version
1.0.0
Hosts
2 documented
License
NOASSERTION
Stars
4,535
01

Overview

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Read from source at commit e1ba289846fdOBSERVED · 2026-10-08
02

Install

Commands as the repository documents them. They are shown, not run.

pip install deepsearcher
git clone https://github.com/zilliztech/deep-searcher.git
pip install -e .
pip install pymilvus[model]
pip install gpt-researcher
git clone https://github.com/assafelovic/gpt-researcher.git
03

Host compatibility

What the documentation claims. We have not run a compatibility test.

HostStatusNotes
claude-codementioned
openclawmentioned
04

What it tells the agent

The instruction file, verbatim from the audited commit — this is the text the model reads, and the surface the audit's instruction layer examines. Quoted here so you can judge it without cloning anything.

---
name: deep-research-skills
description: "13 deep research & systematic reviews skills. Trigger: systematic reviews, multi-source synthesis, comprehensive literature surveys. Design: multi-step research protocols with quality assessment and evidence grading."
---

# Deep Research & Systematic Reviews — 13 Skills

Select the skill matching the user's need, then `read` its SKILL.md.

| Skill | Description |
|-------|-------------|
| [auto-deep-research-guide](./auto-deep-research-guide/SKILL.md) | Automated deep research tool for thorough topic investigation |
| [deep-searcher-guide](./deep-searcher-guide/SKILL.md) | Open deep research alternative for private data with vector search |
| [gpt-researcher-guide](./gpt-researcher-guide/SKILL.md) | Autonomous agent for comprehensive deep research on any topic |
| [in-depth-research-guide](./in-depth-research-guide/SKILL.md) | Structured methodology for conducting exhaustive multi-source investigations |
| [khoj-research-guide](./khoj-research-guide/SKILL.md) | AI second brain for deep research and personal knowledge management |
| [kosmos-scientist-guide](./kosmos-scientist-guide/SKILL.md) | Claude Code-driven autonomous AI Scientist for discovery |
| [llm-scientific-discovery-guide](./llm-scientific-discovery-guide/SKILL.md) | Survey of LLM agents for biomedical scientific discovery |
| [local-deep-research-guide](./local-deep-research-guide/SKILL.md) | Deep research agent searching 10+ sources with local or cloud LLMs |
| [meta-synthesis-guide](./meta-synthesis-guide/SKILL.md) | Conduct qualitative meta-synthesis and evidence synthesis methods |
| [open-researcher-guide](./open-researcher-guide/SKILL.md) | Open pipeline for generating deep research trajectories with LLMs |
| [scoping-review-guide](./scoping-review-guide/SKILL.md) | Scoping review methodology for broad evidence mapping |
| [systematic-review-guide](./systematic-review-guide/SKILL.md) | Systematic review methodology with PRISMA and evidence synthesis |
| [tongyi-deep-research-guide](./tongyi-deep-research-guide/SKILL.md) | Open-source deep research agent by Alibaba for scholarly research |
05

Trust audit

SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.

LayerWhat it checksResult
L0Provenance & inventoryPASS
L1Static analysis of the codeNA
L2Instruction surface (what it tells the agent)PASS
L3Class-specific surfacePASS
L4Behavioural (sandbox)SKIPPED

What the source does

Filesystem
none-observed
Network
none-observed
Shell
none-observed
Dependencies
pinned
Secrets in source
none-found

Findings (0)

No findings outside the package's declared scope.

Gates applied: no_behavioural_pass.

Audited 2026-10-08 · audit v0.4.1 · source sha e1ba289846fdfull audit observations/trust-audit/skill/brycewang-stanford__deep-research.json · Report an issue / request a re-scan
06

Audit history

Every audit this skill has had.

DateSourceVerdictGradeScoreChange
2026-10-08e1ba289846fdSAFEB89first audit
07

Questions

What does the Deep Research skill do?

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Is Deep Research safe to install?

The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean skill reads B.

What can Deep Research access on my machine?

The audit observed no filesystem, network or shell use at all in its source.

What do I need installed to use Deep Research?

Its own instructions reference read. Dependencies are pinned to exact versions.

Which assistants does Deep Research work with?

Its documentation mentions claude-code and openclaw. That is what the text claims, not a compatibility test we ran.

How current is this page?

The grade is for one exact copy of the source (e1ba289846fd), read on 2026-10-08. The repository is watched, and a new audit runs when it changes — this is the first audit.

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