Atlas / Skills / brycewang-stanford / Catalysis Hub Api

Catalysis Hub ApiSAFE

skills/brycewang-stanford/catalysis-hub-api

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Verdict
SAFE
Grade
B
Trust score
89 /100
Version
—
Hosts
2 documented
License
NOASSERTION
Stars
4,535
01

Overview

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Read from source at commit e1ba289846fdOBSERVED · 2026-10-08
02

Host compatibility

What the documentation claims. We have not run a compatibility test.

HostStatusNotes
cursormentioned
openclawmentioned
03

What it tells the agent

The instruction file, verbatim from the audited commit — this is the text the model reads, and the surface the audit's instruction layer examines. Quoted here so you can judge it without cloning anything.

---
name: catalysis-hub-api
description: "Query computational catalysis reaction data via Catalysis Hub GraphQL"
metadata:
  openclaw:
    emoji: "⚗️"
    category: "domains"
    subcategory: "chemistry"
    keywords: ["catalysis", "DFT", "reaction energy", "surface chemistry", "computational chemistry", "GraphQL"]
    source: "https://www.catalysis-hub.org"
---

# Catalysis Hub GraphQL API Guide

## Overview

Catalysis Hub is an open-access database of DFT-calculated reaction energies and activation barriers for heterogeneous catalysis, developed at SUNCAT Center (Stanford/SLAC). It aggregates computational results from published studies, enabling researchers to search, compare, and reuse DFT data for catalyst screening and mechanism validation.

The GraphQL endpoint provides structured access to reactions, publications, and atomic structures. All data is linked to peer-reviewed publications and includes computational details (DFT code, XC functional, surface facet, coverage).

## Authentication

No authentication required. Catalysis Hub is a free public service with no API keys.

## GraphQL Schema

**Endpoint:** `https://api.catalysis-hub.org/graphql`

All queries use HTTP POST with a JSON `query` field. Responses follow the Relay connection pattern (`edges`/`node`).

### Root Query Types

| Query | Description |
|-------|-------------|
| `reactions` | DFT-computed reaction energies and barriers |
| `publications` | Published studies linked to reaction data |
| `systems` | Atomic structure data (ASE Atoms objects) |
| `species` | Chemical species involved in reactions |

### Reaction Fields

`chemicalComposition`, `surfaceComposition`, `facet`, `reactionEnergy` (eV), `activationEnergy` (eV), `dftCode` (e.g. `Quantum-Espresso`, `VASP-5.4.4`), `dftFunctional` (e.g. `RPBE`), `reactants` (JSON), `products` (JSON), `Equation` (e.g. `0.5O2(g) + * -> O*`)

### Publication Fields

`title`, `authors` (JSON), `journal`, `year` (Int), `doi`, `reactions` (linked Reaction list)

## Core Queries

### List Reactions

```bash
curl -s -X POST "https://api.catalysis-hub.org/graphql" \
  -H "Content-Type: application/json" -d '{"query":"{ reactions(first: 3) { edges { node { chemicalComposition reactionEnergy activationEnergy surfaceComposition } } } }"}'
```

Response (truncated):

```json
{"data":{"reactions":{"edges":[
  {"node":{"chemicalComposition":"Nb9Sn3","reactionEnergy":-9.687,"activationEnergy":null,"surfaceComposition":"Nb3Sn"}},
  {"node":{"chemicalComposition":"Ir3V9","reactionEnergy":-8.395,"activationEnergy":null,"surfaceComposition":"V3Ir"}},
  {"node":{"chemicalComposition":"Ir9Ni3","reactionEnergy":-2.005,"activationEnergy":null,"surfaceComposition":"Ir3Ni"}}
]}}}
```

### Filter by Surface Composition

```bash
curl -s -X POST "https://api.catalysis-hub.org/graphql" \
  -H "Content-Type: application/json" -d '{"query":"{ reactions(first: 2, surfaceComposition: \"Pt\") { edges { node { chemicalComposition surfaceComposition facet reactionEnergy dftCode dftFunctional Equation } } } }"}'
```

Response (truncated):

```json
{"data":{"reactions":{"edges":[
  {"node":{"chemicalComposition":"Pt28","surfaceComposition":"Pt","facet":"100","reactionEnergy":0.856,"dftCode":"Quantum-Espresso","dftFunctional":"RPBE","Equation":"0.5N2(g) + * -> N*"}},
  {"node":{"chemicalComposition":"Pt28","surfaceComposition":"Pt","facet":"100","reactionEnergy":-0.984,"dftCode":"Quantum-Espresso","dftFunctional":"RPBE","Equation":"0.5O2(g) + * -> O*"}}
]}}}
```

### Search by Chemical Composition (partial match with `~` prefix)

```bash
curl -s -X POST "https://api.catalysis-hub.org/graphql" \
  -H "Content-Type: application/json" -d '{"query":"{ reactions(first: 3, chemicalComposition: \"~CO\") { edges { node { chemicalComposition reactionEnergy dftCode } } } }"}'
```

Response (truncated):

```json
{"data":{"reactions":{"edges":[
  {"node":{"chemicalComposition":"Co9Cr2FeMnNiO20","reactionEnergy":1.910,"dftCode":"VASP-5.4.4"}},
  {"node":{"chemicalComposition":"Co9Cr2FeMnNiO20","reactionEnergy":0.648,"dftCode":"VASP-5.4.4"}},
  {"node":{"chemicalComposition":"Co10CrFeMnNiO20","reactionEnergy":3.167,"dftCode":"VASP-5.4.4"}}
]}}}
```

### Query Publications

```bash
curl -s -X POST "https://api.catalysis-hub.org/graphql" \
  -H "Content-Type: application/json" -d '{"query":"{ publications(first: 2, year: 2019) { edges { node { title authors journal year doi } } } }"}'
```

Response (truncated):

```json
{"data":{"publications":{"edges":[
  {"node":{"title":"High-Throughput Calculations of Catalytic Properties of Bimetallic Alloy Surfaces","authors":"[\"Mamun, Osman\",\"Winther, Kirsten T.\",\"Boes, Jacob R.\",\"Bligaard, Thomas\"]","journal":"Scientific Data","year":2019,"doi":"10.1038/s41597-019-0080-z"}},
  {"node":{"title":"Selective high-temperature CO2 electrolysis enabled by oxidized carbon intermediates","journal":"Nature Energy","year":2019,"doi":"10.1038/s41560-019-0457-4"}}
]}}}
```

## Rate Limits

- No documented rate limits; add 200-500ms delays between requests as courtesy
- Use `first` to limit results; pagination via cursor-based `after` argument

## Academic Use Cases

- **Catalyst Screening:** Compare adsorption energies across bimetallic alloy surfaces to identify candidates for target reactions (ORR, NRR, HER)
- **DFT Validation:** Cross-reference your DFT results against published values matched by surface, facet, and functional
- **Scaling Relations:** Retrieve adsorption energies across surfaces to build Bronsted-Evans-Polanyi (BEP) relations
- **Literature Discovery:** Find publications by year or linked reactions for citation and methodology verification

## Python Example

```python
import requests

ENDPOINT = "https://api.catalysis-hub.org/graphql"

def query_catalysis_hub(query):
    """Execute a GraphQL query against Catalysis Hub."""
    resp = requests.post(ENDPOINT, json={"query": query})
    resp.raise_for_status()
    return resp.json()["data"]

# Screen adsorption energies on Pt 
04

Trust audit

SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.

LayerWhat it checksResult
L0Provenance & inventoryPASS
L1Static analysis of the codeNA
L2Instruction surface (what it tells the agent)PASS
L3Class-specific surfacePASS
L4Behavioural (sandbox)SKIPPED

What the source does

Filesystem
none-observed
Network
none-observed
Shell
none-observed
Dependencies
pinned
Secrets in source
none-found

Findings (0)

No findings outside the package's declared scope.

Gates applied: no_behavioural_pass.

Audited 2026-10-08 · audit v0.4.1 · source sha e1ba289846fdfull audit observations/trust-audit/skill/brycewang-stanford__catalysis-hub-api.json · Report an issue / request a re-scan
05

Audit history

Every audit this skill has had.

DateSourceVerdictGradeScoreChange
2026-10-08e1ba289846fdSAFEB89first audit
06

Questions

What does the Catalysis Hub Api skill do?

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Is Catalysis Hub Api safe to install?

The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean skill reads B.

What can Catalysis Hub Api access on my machine?

The audit observed no filesystem, network or shell use at all in its source.

Which assistants does Catalysis Hub Api work with?

Its documentation mentions cursor and openclaw. That is what the text claims, not a compatibility test we ran.

How current is this page?

The grade is for one exact copy of the source (e1ba289846fd), read on 2026-10-08. The repository is watched, and a new audit runs when it changes — this is the first audit.

Advertisement