Atlas / Skills / brycewang-stanford / Biomedical

BiomedicalSAFE

skills/brycewang-stanford/biomedical

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Verdict
SAFE
Grade
B
Trust score
89 /100
Version
—
Hosts
2 documented
License
NOASSERTION
Stars
4,535
01

Overview

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Read from source at commit e1ba289846fdOBSERVED · 2026-10-08
02

Install

Commands as the repository documents them. They are shown, not run.

pip install genomas
git clone https://github.com/futianfan/GenoMAS.git
03

Host compatibility

What the documentation claims. We have not run a compatibility test.

HostStatusNotes
cursormentioned
openclawmentioned
04

What it tells the agent

The instruction file, verbatim from the audited commit — this is the text the model reads, and the surface the audit's instruction layer examines. Quoted here so you can judge it without cloning anything.

---
name: biomedical-skills
description: "24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides."
---

# Biomedical Research — 24 Skills

Select the skill matching the user's need, then `read` its SKILL.md.

| Skill | Description |
|-------|-------------|
| [alphafold-api](./alphafold-api/SKILL.md) | Query AlphaFold protein structure predictions by UniProt accession |
| [bioagents-guide](./bioagents-guide/SKILL.md) | AI scientist framework for autonomous biological research workflows |
| [biothings-api](./biothings-api/SKILL.md) | Query gene, variant, and drug annotations via BioThings APIs |
| [clawbio-guide](./clawbio-guide/SKILL.md) | OpenClaw bioinformatics skill library for genomics pipelines |
| [clinical-dialogue-agents-guide](./clinical-dialogue-agents-guide/SKILL.md) | Papers on AI agents for clinical dialogue and medical QA |
| [clinical-research-guide](./clinical-research-guide/SKILL.md) | Design clinical studies and report using CONSORT, STROBE guidelines |
| [clinicaltrials-api](./clinicaltrials-api/SKILL.md) | Clinical trial registry database search API |
| [clinicaltrials-api-v2](./clinicaltrials-api-v2/SKILL.md) | Search and analyze clinical trials via the ClinicalTrials.gov v2 API |
| [ena-sequence-api](./ena-sequence-api/SKILL.md) | Access nucleotide sequence data from the European Nucleotide Archive |
| [enrichr-api](./enrichr-api/SKILL.md) | Perform gene set enrichment analysis using the Enrichr API |
| [ensembl-rest-api](./ensembl-rest-api/SKILL.md) | Query gene, sequence, and variant data via the Ensembl REST API |
| [epidemiology-guide](./epidemiology-guide/SKILL.md) | Epidemiological study designs, measures of association, and public health ana... |
| [genomas-guide](./genomas-guide/SKILL.md) | Automate gene expression analysis with the GenoMAS multi-agent system |
| [genomics-analysis-guide](./genomics-analysis-guide/SKILL.md) | Workflows for RNA-seq, GWAS, and variant calling in genomic research |
| [genotex-benchmark-guide](./genotex-benchmark-guide/SKILL.md) | Benchmark for LLM agents on gene expression data analysis |
| [med-researcher-guide](./med-researcher-guide/SKILL.md) | Multi-agent system for biomedical literature review and synthesis |
| [med-researcher-r1-guide](./med-researcher-r1-guide/SKILL.md) | Medical deep research agent with reasoning chain analysis |
| [medgeclaw-guide](./medgeclaw-guide/SKILL.md) | AI research assistant for biomedicine, RNA-seq, and drug discovery |
| [medical-data-api](./medical-data-api/SKILL.md) | Access FDA drug data and WHO global health statistics for research |
| [medical-imaging-guide](./medical-imaging-guide/SKILL.md) | Medical image analysis with deep learning for research applications |
| [ncbi-blast-api](./ncbi-blast-api/SKILL.md) | Run sequence similarity searches via the NCBI BLAST REST API |
| [ncbi-datasets-api](./ncbi-datasets-api/SKILL.md) | Access genomes, genes, and taxonomy data via NCBI Datasets v2 API |
| [pdb-structure-api](./pdb-structure-api/SKILL.md) | Search and retrieve 3D protein structures from the RCSB Protein Data Bank |
| [quickgo-api](./quickgo-api/SKILL.md) | Browse and search Gene Ontology annotations via the QuickGO API |
05

Trust audit

SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.

LayerWhat it checksResult
L0Provenance & inventoryPASS
L1Static analysis of the codeNA
L2Instruction surface (what it tells the agent)PASS
L3Class-specific surfacePASS
L4Behavioural (sandbox)SKIPPED

What the source does

Filesystem
none-observed
Network
none-observed
Shell
none-observed
Dependencies
pinned
Secrets in source
none-found

Findings (0)

No findings outside the package's declared scope.

Gates applied: no_behavioural_pass.

Audited 2026-10-08 · audit v0.4.1 · source sha e1ba289846fdfull audit observations/trust-audit/skill/brycewang-stanford__biomedical.json · Report an issue / request a re-scan
06

Audit history

Every audit this skill has had.

DateSourceVerdictGradeScoreChange
2026-10-08e1ba289846fdSAFEB89first audit
07

Questions

What does the Biomedical skill do?

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,并支持用户上传 Skills。-- Maintained by CoPaper.AI from Stanford REAP.

Is Biomedical safe to install?

The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean skill reads B.

What can Biomedical access on my machine?

The audit observed no filesystem, network or shell use at all in its source.

What do I need installed to use Biomedical?

Its own instructions reference read. Dependencies are pinned to exact versions.

Which assistants does Biomedical work with?

Its documentation mentions cursor and openclaw. That is what the text claims, not a compatibility test we ran.

How current is this page?

The grade is for one exact copy of the source (e1ba289846fd), read on 2026-10-08. The repository is watched, and a new audit runs when it changes — this is the first audit.

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