bioroboticsSAFE
An open-source, stateless Model Context Protocol (MCP) framework bridging biological datasets (NCBI/UniProt) with deterministic physical coordinates for robotic automation.
Overview
From the repository's own README, as read at the audited commit. Badges and raw HTML are left out.
[](https://glama.ai/mcp/servers/SEOSiri-Official/biorobotics)
An open-source, stateless Model Context Protocol (MCP) framework bridging the gap between biological datasets, physiological biosignals, and physical robotic actuation systems.
💖 Sponsorship & Open Source Attribution
This project is developed and maintained by [SEOSiri-Official](https://github.com/SEOSiri-Official) (Official website: seosiri.com).
To fund ongoing engineering research or scale the core physical kinematics engine, consider supporting the team via the SEOSiri Sponsors Page.
Architecture Overview
This framework acts as a stateless broker. Biological inputs (fetched dynamically from standard web APIs like UniProt or fallback reference data) and physiological biosignals (such as surface electromyography, or EMG) are digested, normalized via mathematical boundaries, and translated into explicit Cartesian physical coordinates represented strictly in International System (SI) units (meters). These coordinates are subsequently mapped to standardized G-code strings for physical motion planning or robotic prosthetic actuation.
[Raw Input: Bio-Data / EMG] → [Stateless MCP Server] → [Deterministic Math Core] → [G-code Serial Stream]
Tools
This server exposes six MCP tools:
3265e96cba21OBSERVED · 2026-10-11Connect
Built from this server's own package name, version and transport as found in its source — not copied from anyone's documentation, so it cannot drift against a page we do not control.
claude mcp add seosiri-biorobotics -- uvx seosiri-biorobotics
{
"mcpServers": {
"seosiri-biorobotics": {
"command": "uvx",
"args": [
"seosiri-biorobotics"
]
}
}
}Exposed tools (6)
6 read · 0 write · 0 destructive.
| Tool | Risk | Description |
|---|---|---|
calculate_dna_melting_temp | read | |
calculate_pipetting_speed | read | |
fetch_genomic_data | read | |
map_plate_coordinate | read | |
resolve_biotech_spatial_intent | read | Translates assay parameters into immutable spatial metrics using SI base units (meters). |
translate_emg_to_actuation | read |
Trust audit
SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.
| Layer | What it checks | Result |
|---|---|---|
| L0 | Provenance & inventory | PASS |
| L1 | Static analysis of the code | PASS |
| L2 | Instruction surface (what it tells the agent) | PASS |
| L3 | Class-specific surface | PASS |
| L4 | Behavioural (sandbox) | SKIPPED |
What the source does
- Filesystem
- none-observed
- Network
- declared (2 observation(s))
- Shell
- none-observed
- Dependencies
- pinned
- Secrets in source
- none-found
Findings (0)
No findings outside the package's declared scope.
Gates applied: no_behavioural_pass.
3265e96cba21full audit observations/trust-audit/mcp-server/seosiri-official__biorobotics.json · Report an issue / request a re-scanAudit history
Every audit this server has had. A grade with a past is a grade somebody is still checking.
| Date | Source | Verdict | Grade | Score | Change |
|---|---|---|---|---|---|
| 2026-10-11 | 3265e96cba21 | SAFE | B | 89 | first audit |
Questions
What is the biorobotics MCP server?
An open-source, stateless Model Context Protocol (MCP) framework bridging biological datasets (NCBI/UniProt) with deterministic physical coordinates for robotic automation.
What tools does biorobotics expose?
6 in total: 6 read-only, 0 that write, and 0 that can delete or overwrite. Every one is listed on this page with its risk.
Is biorobotics safe to connect to an agent?
The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean server reads B.
What credentials does biorobotics need?
No credential environment variables were found in its source, so it appears to need none.
How does biorobotics run?
It speaks sse and stdio, so it runs as a local process your client starts. It is published on PyPI as seosiri-biorobotics.
How current is this page?
The grade is for one exact copy of the source (3265e96cba21), read on 2026-10-11. The repository is watched and re-audited when it changes.