Medical APIsSAFE
A collection of MCP tools for AI agents to interact with major biomedical databases
Overview
From the repository's own README, as read at the audited commit. Badges and raw HTML are left out.
[](https://pypi.org/project/medical-mcps/) [](https://www.python.org/downloads/) [](https://opensource.org/licenses/MIT) [](https://github.com/pascalwhoop/medical-mcps/actions/workflows/release.yml)
MCP server that integrates multiple biological and medical databases for research purposes.
Quick Start
Connect to Production Server
The easiest way to use this MCP server is to connect to the production deployment. All APIs are available through a unified endpoint that gives you access to all tools in one place.
Production URL: https://mcp.cloud.curiloo.com/tools/unified/mcp
Configure in Cursor (or other MCP client)
Add this to your .cursor/mcp.json (or equivalent MCP client configuration):
{
"mcpServers": {
"medical-apis": {
"url": "https://mcp.cloud.curiloo.com/tools/unified/mcp"
}
}
}What You Get
Once connected, you'll have access to 100+ tools across 14 biological and medical APIs:
- Pathways: Reactome, KEGG, Pathway Commons
- Genes & Proteins: UniProt, MyGene.info, Node Normalization
- Targets & Associations: OpenTargets Platform
- Variants: MyVariant.info, GWAS Catalog
- Diseases: OMIM, MyDisease.info
- Drugs: ChEMBL, MyChem.info, OpenFDA
- Literature: PubMed/PubTator3
- Trials: ClinicalTrials.gov, NCI Clinical Trials
- Knowledge Graphs: Every Cure Matrix Knowledge Graph
Example: Search for a Gene
{
"jsonrpc": "2.0",
"method": "tools/call",
"params": {
"name": "mygene_get_gene",
"arguments": {
"gene_id_or_symbol": "TP53"
}
}
}Individual
0af78e15110bOBSERVED · 2026-10-09Connect
Built from this server's own package name, version and transport as found in its source — not copied from anyone's documentation, so it cannot drift against a page we do not control. Replace the environment placeholders with a token scoped to the least it needs.
claude mcp add medical-mcps --env NCI_API_KEY=${NCI_API_KEY} --env OMIM_API_KEY=${OMIM_API_KEY} -- uvx medical-mcps{
"mcpServers": {
"medical-mcps": {
"command": "uvx",
"args": [
"medical-mcps"
],
"env": {
"NCI_API_KEY": "${NCI_API_KEY}",
"OMIM_API_KEY": "${OMIM_API_KEY}"
}
}
}
}Exposed tools (1)
1 read · 0 write · 0 destructive.
| Tool | Risk | Description |
|---|---|---|
existing_tool | read | return { |
Trust audit
SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.
| Layer | What it checks | Result |
|---|---|---|
| L0 | Provenance & inventory | PASS |
| L1 | Static analysis of the code | WARN |
| L2 | Instruction surface (what it tells the agent) | PASS |
| L3 | Class-specific surface | PASS |
| L4 | Behavioural (sandbox) | SKIPPED |
What the source does
- Filesystem
- declared (1 observation(s))
- Network
- declared (7 observation(s))
- Shell
- none-observed
- Dependencies
- pinned
- Secrets in source
- found
Findings (3)
api_key: "your-real-omim-api-key"
.pre-commit-config.yaml
content = yaml.load(f, Loader=SafeLoaderIgnoreUnknown)
Gates applied: no_behavioural_pass.
0af78e15110bfull audit observations/trust-audit/mcp-server/pascalwhoop__medical-apis.json · Report an issue / request a re-scanAudit history
Every audit this server has had. A grade with a past is a grade somebody is still checking.
| Date | Source | Verdict | Grade | Score | Change |
|---|---|---|---|---|---|
| 2026-10-09 | 0af78e15110b | SAFE | B | 89 | first audit |
Questions
What is the Medical APIs MCP server?
A collection of MCP tools for AI agents to interact with major biomedical databases
What tools does Medical APIs expose?
1 in total: 1 read-only, 0 that write, and 0 that can delete or overwrite. Every one is listed on this page with its risk.
Is Medical APIs safe to connect to an agent?
The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean server reads B.
What credentials does Medical APIs need?
It reads NCI_API_KEY and OMIM_API_KEY from the environment. Give it a token scoped to the least it needs — an agent that can be talked into calling a tool can be talked into calling it with your credentials.
How does Medical APIs run?
It speaks streamable-http, so it runs as a service you connect to over the network. It is published on PyPI as medical-mcps.
How current is this page?
The grade is for one exact copy of the source (0af78e15110b), read on 2026-10-09. The repository is watched and re-audited when it changes.