Atlas / MCP servers / chirag127 / Clear Thought

Clear ThoughtSAFE

Name: Clear Thought
Author: chirag127

mcp/chirag127/clear-thought-1

MCP server by chirag127 · mcp · mcp server · mental models · Audited 2026-10-08

⚑ Report / re-scan Source ↗

MCP server providing systematic thinking, mental models, and debugging approaches for enhanced LLM problem-solving

Verdict

SAFE

Grade

Trust score

89 /100

Exposed tools

15 15r · 0w · 0d

Transport

stdio · streamable-http

License

MIT

Stars

Overview

From the repository's own README, as read at the audited commit. Badges and raw HTML are left out.

Systematic thinking, mental models, and debugging approaches — as MCP tools for any AI client.

[](LICENSE) [](https://github.com/chirag127/Clear-Thought-MCP-server/stargazers) [](https://github.com/chirag127/Clear-Thought-MCP-server/commits) [](https://www.typescriptlang.org/) [](https://nodejs.org/) [](https://github.com/chirag127/Clear-Thought-MCP-server/actions/workflows/ci.yml) [](https://smithery.ai/server/@chirag127/clear-thought-mcp-server)

What it is / why it exists

An MCP server that gives an AI assistant a toolbox of structured reasoning frameworks — mental models, design patterns, systematic debugging, decision analysis, the scientific method, and more — so it reasons deliberately instead of improvising. Each mode is an explicit, inspectable tool the model calls, with typed (Zod-validated) inputs and a formatted, chain-of-thought-friendly response.

Twelve tools, one server, zero required configuration.

Connect

Built from this server's own package name, version and transport as found in its source — not copied from anyone's documentation, so it cannot drift against a page we do not control.

claude-code

claude mcp add clear-thought-mcp-server -- npx -y [email protected]

claude-desktop

{
  "mcpServers": {
    "clear-thought-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "[email protected]"
      ]
    }
  }
}

Exposed tools (15)

15 read · 0 write · 0 destructive.

Tool	Risk	Description
`AWS`	read	Amazon cloud
`GCP`	read	Google cloud
`Postgres`	read	SQL
`collaborativereasoning`	read
`debuggingapproach`	read
`decisionframework`	read
`designpattern`	read
`mentalmodel`	read
`metacognitivemonitoring`	read
`programmingparadigm`	read
`scientificmethod`	read
`sequentialthinking`	read
`stochasticthinking`	read
`structuredargumentation`	read
`visualreasoning`	read

Trust audit

SAFEgrade B · trust 89/100 Nothing in the source contradicts what it says it does. Grade A is reserved for packages that have also passed the behavioural sandbox.

Layer	What it checks	Result
L0	Provenance & inventory	PASS
L1	Static analysis of the code	PASS
L2	Instruction surface (what it tells the agent)	PASS
L3	Class-specific surface	PASS
L4	Behavioural (sandbox)	SKIPPED

What the source does

Filesystem: none-observed
Network: none-observed
Shell: none-observed
Dependencies: not all pinned
Secrets in source: none-found

Findings (2)

LOWInventory / provenance · inv.hidden_file · CWE-1104

.mega-linter.yml

.mega-linter.yml

Why it matters. hidden member outside the usual dotfiles

Fix. review its purpose

LOWSupply chain · supply.unpinned · CWE-829, CWE-1357

package.json

@modelcontextprotocol/sdk, chalk, zod, @types/node, typescript, vitest

Why it matters. 6 dependency range(s) float

Fix. pin exact versions or ship a lockfile

Gates applied: no_behavioural_pass.

Audited 2026-10-08 · audit v0.4.1 · source sha d873c39966a8full audit observations/trust-audit/mcp-server/chirag127__clear-thought-1.json · Report an issue / request a re-scan

Audit history

Every audit this server has had. A grade with a past is a grade somebody is still checking.

Date	Source	Verdict	Grade	Score	Change
2026-10-08	`d873c39966a8`	SAFE	B	89	first audit

Questions

What is the Clear Thought MCP server?

MCP server providing systematic thinking, mental models, and debugging approaches for enhanced LLM problem-solving

What tools does Clear Thought expose?

15 in total: 15 read-only, 0 that write, and 0 that can delete or overwrite. Every one is listed on this page with its risk.

Is Clear Thought safe to connect to an agent?

The audit found nothing in the source that contradicts what it says it does, and graded it B (89/100). Grade A is held back for packages that have also passed a sandboxed behavioural run, which is why a clean server reads B.

What credentials does Clear Thought need?

No credential environment variables were found in its source, so it appears to need none.

How does Clear Thought run?

It speaks stdio and streamable-http, so it runs as a local process your client starts. It is published on npm as clear-thought-mcp-server at 1.1.2.

How current is this page?

The grade is for one exact copy of the source (d873c39966a8), read on 2026-10-08. The repository is watched and re-audited when it changes.